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Basic query

Annotation title

General options
Positions of query sequence start end	Staistics Type ITA[1,1]   ITA[0,1]   USUAL	Additional output Graphical alignment FT fragments & DR keywords Cross-reference map Alignments descriptions Statistics

DotHelix options
Motif's length threshold (4 to 50)	Motif's power threshold (3 to 5)	Accurate DotHelix OnOff	Weight matrices DNA/RNA Dayhoff Johnson Blosum 30 Blosum 50 Blosum 62 Pam 60 Pam 120 Pam 250 Gonnet 120 Gonnet 250 Gonnet 350
Supermotif's options
Alignment's power threshold (6 to 9)	Gap penalty	Maximum number of shifts	Maximum number of reported alignments
FT fragment picture options
Max number of FT keywords (1-20)	Excluded fragments Secondary structure: HELIX, TURN, STRAND CHAIN DOMAIN		DOMAIN extension to qualifier OnOff
Other options
Coincidence ratio	Min. homology ratio (0 to 1)	Motif frequences recalc OnOff	Strand BothOnly forward
Clusterization type Each frame separately Codirectional frames joinly

Enter or Paste here your sequence in Fasta format

>NRAS_1
MTEYKLVVVG AGGVGKSALT IQLIQNHFVD EYDPTIEDSY RKQVVIDGET CLLDILDTAG
QEEYSAMRDQ VFAINNSKSF ADINLYREQI KRVKDSDDVP MVLVGNKCDL PTRTVDTKQA
HELAKSYGIP GVEDAFYTLV REIRQYRMKK LNSSDDGTQG CMGLPCVVM

Comments and bug-reports send to: Vladimir Nikolaev
Last updated: December 23, 2008.